Book chapter2023Peer reviewed
Sample preparation for fungal community analysis by high-throughput sequencing of barcode amplicons
Clemmensen, Karina; Ihrmark, Katarina; Brandström Durling, Mikael et al.
Publications
2023
2021
Research article2021Peer reviewedOpen access
Comparative genomics highlights the importance of drug efflux transporters during evolution of mycoparasitism in Clonostachys subgenus Bionectria (Fungi, Ascomycota, Hypocreales)
Broberg, Martin; Dubey, Mukesh; Iqbal, Mudassir et al.
Research article2021Peer reviewedOpen access
Comparative analyses of the Hymenoscyphus fraxineus and Hymenoscyphus albidus genomes reveals potentially adaptive differences in secondary metabolite and transposable element repertoires
Elfstrand, Malin; Chen, Jun; Cleary, Michelle et al.
2020
Research article2020Peer reviewedOpen access
Optimized metabarcoding with Pacific biosciences enables semi-quantitative analysis of fungal communities
Castano, Carles; Berlin, Anna; Brandstrom Durling, Mikael et al.
Research article2020Peer reviewedOpen access
Marker-Trait Associations for Tolerance to Ash Dieback in Common Ash (Fraxinus excelsior L.)
Chaudhary, Rajiv; Ronneburg, Tilman; Aslund, Matilda Stein et al.
Research article2020Peer reviewedOpen access
Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers
Barbi, Florian; Kohler, Annegret; Barry, Kerrie et al.
2019
Research article2019Peer reviewedOpen access
Estimating the Fitness Effect of Deleterious Mutations During the Two Phases of the Life Cycle: A New Method Applied to the Root-Rot Fungus Heterobasidion parviporum
Clergeot, Pierre-Henri; Rode, Nicolas O.; Glemin, Sylvain et al.
2018
Research article2018Peer reviewedOpen access
Out in the Cold: Identification of Genomic Regions Associated With Cold Tolerance in the Biocontrol Fungus Clonostachys rosea Through Genome-Wide Association Mapping
Broberg, Martin; Dubey, Mukesh; Sun, Man-Hong et al.
2017
Research article2017Peer reviewed
Genomes of Hymenoscyphus fraxineus and Hymenoscyphus albida encode surprisingly large cell wall degrading potential, balancing saprotrophic and necrotrophic signatures
Stenlid, Jan; Elfstrand, Malin; Cleary, Michelle et al.
2016
Research article2016Peer reviewedOpen access
Different Alleles of a Gene Encoding Leucoanthocyanidin Reductase (PaLAR3) Influence Resistance against the Fungus Heterobasidion parviporum in Picea abies
Nemesio Gorriz, Miguel; Hammerbacher, Almuth; Ihrmark, Katarina et al.
Research article2016Peer reviewedOpen access
Do foliar fungal communities of Norway spruce shift along a tree species diversity gradient in mature European forests?
Nguyen, Diem; Boberg, Johanna; Ihrmark, Katarina et al.
Book chapter2016Peer reviewed
Sample Preparation for Fungal Community Analysis by High-Throughput Sequencing of Barcode Amplicons
Clemmensen, Karina Engelbrecht; Ihrmark, Katarina; Durling, Mikael Brandstrom et al.;Martin, F (ed.);Uroz, S (ed.).
2015
Research article2015Peer reviewedOpen access
Transcriptional Responses Associated with Virulence and Defence in the Interaction between Heterobasidion annosum s. s. and Norway Spruce
Lundén, Karl; Danielsson, Marie; Brandström Durling, Mikael et al.
Research article2015Peer reviewed
The primer fITS9 prevents chimera formation during fungal DNA amplification in a bark beetle DNA background
Strid, Ylva; Ihrmark, Katarina; Stenlid, Jan.
2014
Book chapter2014Peer reviewed
Molecular Evolution of Trichoderma Chitinases
Seidl-Seiboth, Verena; Ihrmark, Katarina; Druzhinina, Irina et al.
Research article2014Peer reviewed
Root-Associated Fungi of Rosa rugosa Grown on the Frontal Dunes of the Baltic Sea Coast in Lithuania
Menkis, Audrius; Ihrmark, Katarina; Stenlid, Jan et al.
Research article2014Peer reviewed
Bark beetles have a decisive impact on fungal communities in Norway spruce stem sections
Strid, Ylva; Schroeder, Martin; Lindahl, Björn et al.
2013
Research article2013Peer reviewedOpen access
Extensive Trans-Specific Polymorphism at the Mating Type Locus of the Root Decay Fungus Heterobasidion
van Diepen, Linda T A; Olson, Åke; Ihrmark, Katarina et al.
Research article2013Peer reviewedOpen access
Fungal communities associated with field grown oilseed rape (Brassica napus L.) - their possible role in early crop establishment
Neupane, Saraswoti; Andersson, Björn; Högberg, Nils et al.
2012
Research article2012Peer reviewedOpen access
New primers to amplify the fungal ITS2 region–evaluation by 454‐sequencing of artificial and natural communities
Ihrmark, Katarina; Bödeker, Inga; Cruz‐Martinez, Karelyn et al.
2011
Conference paper2011
Identification of adaptive evolutionary changes in Trichoderma chitinase chi18-13
Karlsson, Magnus; Ihrmark, Katarina; Asmail, Nashwan et al.
Research article2011Peer reviewedOpen access
The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi
Eastwood, Daniel; Floudas, Dimitris; Binder, Manfred et al.
Research article2011Peer reviewed
Decomposing capacity of fungi commonly detected in Pinus sylvestris needle litter
Boberg, Johanna; Ihrmark, Katarina; Lindahl, Björn.
Research article2011Peer reviewedOpen access
Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection
Danielsson, Marie; Lundén, Karl; Elfstrand, Malin et al.
Research article2011Peer reviewed
A canker and dieback disease threatening the cultivation of Grevillea robusta on small-scale farms in Kenya
Njuguna, Jane W.; Barklund, Pia; Ihrmark, Katarina et al.
Research article2011Peer reviewed
Do bark beetles facilitate the establishment of rot fungi in Norway spruce?
Strid, Ylva; Ihrmark, Katarina; Stenlid, Jan.
Research article2011Peer reviewed
Root rot, associated fungi and their impact on health condition of declining Fraxinus excelsior stands in Lithuania
Bakys, Remigijus; Vasiliauskas, Albertas; Ihrmark, Katarina et al.
Research article2011Peer reviewed
New genetic markers for identifying Cronartium flaccidum and Peridermium pini and examining genetic variation within and between lesions of Scots pine blister rust in Sweden
Samils, Berit; Ihrmark, Katarina; Kaitera, Juha et al.
Research article2011Peer reviewed
Archaeorhizomycetes: Unearthing an Ancient Class of Ubiquitous Soil Fungi
Rosling, Anna; Cox, Filipa; Cruz-Martinez, Karelyn et al.
2010
Research article2010Peer reviewed
Detection of Chalara fraxinea from tissue of Fraxinus excelsior using species-specific ITS primers
Bengtsson, Stina; Vasaitis, Rimvydas; Ihrmark, Katarina et al.
Research article2010Peer reviewed
Comparative Molecular Evolution of Trichoderma Chitinases in Response to Mycoparasitic Interactions
Ihrmark, Katarina; Asmail, Nashwan; Ubhayasekera, Wimal et al.
2009
Research article2009Peer reviewedOpen access
Investigations concerning the role of Chalara fraxinea in declining Fraxinus excelsior
Bakys, Remigijus; Vasaitis, Rimvydas; Barklund, Pia et al.
Research article2009Peer reviewed
Fungi Vectored by the Bark Beetle Ips typographus Following Hibernation Under the Bark of Standing Trees and in the Forest Litter
Persson, Ylva; Vasaitis, Rimvydas; Langstrom, Bo et al.
2007
Research article2007Peer reviewed
First report of canker and dieback disease of Grevillea robusta in East Africa caused by Botryosphaeria spp
Toljander YK, Nyeko P, Stenstrom E, Ihrmark K, Barklund P.
Research article2007Peer reviewedOpen access
Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest
Lindahl BD, Ihrmark K, Boberg J, Trumbore SE, Hogberg P, Stenlid J, Finlay RD.
2006
Conference paper2006
Fungi associated with the decline of Fraxinus excelsior in the Baltic States and Sweden
Vasiliauskas, Rimvis; Bakys, Remis; Lygis, Vaidotas et al.
Conference paper2006
Fungi in root systems and crowns of declining Fraxinus excelsior
Bakys, Remigijus; Vasiliauskas, Rimvydas; Barklund, Pia et al.
Book chapter2006
Fungi associated with crown dieback of Fraxinus excelsior
Vasiliauskas, Rimvydas; Bakys, Remigijus; Lygis, Vaidotas et al.
Research article2006Peer reviewedOpen access
Wood-inhabiting fungal communities in woody debris of Norway spruce (Picea abies(L.) Karst.), as reflected by sporocarps, mycelial isolations and T-RFLP identification
Allmer J, Vasiliauskas R, Ihrmark K, Stenlid J, Dahlberg A.
2005
Research article2005Peer reviewed
Identification of Lophodermium seditiosum and L-pinastri in Swedish forest nurseries using species-specific PCR primers from the ribosomal ITS region
Stenstrom E, Ihrmark K.
2004
Research article2004Peer reviewed
Double-stranded RNA transmission through basidiospores of Heterobasidion annosum
Ihrmark K, Stenstrom E, Stenlid J.
2003
Conference paper2003
Presence of dsRNA in Heterobasidion annosum
Zheng, Juxian; Ihrmark, Katarina; Stenlid, Jan et al.
2002
Research article2002Peer reviewed
Transmission of double-stranded RNA in Heterobasidion annosum
Ihrmark, Katarina; Johannesson, Hanna; Stenström, Elna et al.
2001
Doctoral thesis2001Open access
Double-stranded RNA elements in the root rot fungus Heterobasidion annosum
Ihrmark, Katarina.
Research article2001Peer reviewed
Presence of double-stranded RNA in Heterobasidion annosum
Ihrmark, Katarina; Zheng, Juxian; Stenström, Elna et al.
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